Publications
Total number of scientific publications
227
Total number of peer reviewed scientific publications
172
Publications by category
A. Articles in international scientific journals with referee practice
Nirhamo, A., Hämäläinen, A., Hämäläinen, K. & Kouki, J. 2024: Retention forestry can maintain epiphytic lichens on living pine trees, but provides impoverished habitat for deadwood-associated lichens. - Journal of Applied Ecology in press.
Njoroge, D., Dossa, G. O. D., Schaefer, D., Zuo, J., Ulyshen, M., Seibold, S., Zanne, A., Oberle, B., Harrison, R., Liu, S., Li, X., Birkemoe, T., Taylor, M. K., Burton, P., Lindenmayer, D., Kouki, J., Adhikari, Y. & Cornelissen, H. 2024: The effects of invertebrates on wood decomposition across the world. - Biological Reviews in press.
Tariyal, G., Flury, R., Kouki, J. & Aakala, T. 2024: Local and regional factors influencing historical forest fires in eastern Fennoscandia. - Philosophical Transactions of the Royal Society B in press.
Nirhamo, A., Hämäläinen, A., Hämäläinen, K. & Kouki, J. 2024: The response of epiphytic lichens on living and dead Pinus sylvestris to prescribed fires of varying severity. - Forest Ecology and Management 551: 121558.
https://doi.org/10.1016/j.foreco.2023.121558
Pakkala, T., Peltonen, A., Lindberg, H., Hjältén, J. & Kouki, J. 2024: The intensity of forest management affects the nest cavity production of woodpeckers and tits in mature boreal forests. - European Journal of Forest Research.
https://doi.org/10.1007/s10342-023-01645-x
Nirhamo, A., Hämäläinen, K., Junninen, K. & Kouki, J. 2023: Deadwood on clearcut sites during 20 years after harvests: The effects of tree retention level and prescribed burning. - Forest Ecology and Management 545: 121287.
https://doi.org/10.1016/j.foreco.2023.121287
Petersen, T. K., Kolstad, A. L., Kouki, J., Leroux, S. J., Potvin, L. R., Tremblay, J.-P., Wallgren, M., Widemo, F., Cromsigt, J. P. G. M., Courtois, C., Austrheim, G., Gosse, J., den Herder, M., Hermanutz, L. & Speed, J. D. M. 2023: Airborne laser scanning reveals uniform responses of forest structure to moose (Alces alces) across the boreal forest biome. - Journal of Ecology 111: 1396-1410.
https://doi.org/10.1111/1365-2745.14093
Nirhamo, A., Pykälä, J., Jääskeläinen, K. & Kouki, J. 2023: Habitat associations of red-listed epiphytic lichens in Finland. Silva Fennica 57, article id 22019.
https://silvafennica.fi/article/22019
Tinya, F., Doerfler, I., de Groot, M., Heilman-Clausen, J., Kovács, B., Mårell, A., Nordén, B., Aszalós, R., Bässler, C., Brazaitis, G., Burrascano, S., Camprodon, J., Chudomelová, M., Čížek, L., D'Andrea, E., Gossner, M., Halme, P., Hédl, R., Korboulewsky, N., Kouki, J., Kozel, P., Lõhmus, A., López, R., Máliš, F., Martín, J. A., Matteucci, G., Mattioli, W., Mundet, R., Müller, J., Nicolas, M., Oldén, A., Piqué, M., Preikša, Ž., Rovira Ciuró, J., Remm, L., Schall, P., Šebek, P., Seibold, S., Simončič, P., Ujházy, K., Ujházyová, M., Vild, O., Vincenot, L., Weisser, W. & Ódor, P. 2023: A synthesis of multi-taxa management experiments to guide forest biodiversity conservation in Europe. - Global Ecology and Conservation 46: e02553.
https://doi.org/10.1016/j.gecco.2023.e02553
Mönkkönen, M., Aakala, T., Blattert, C., Burgas, D., Duflot, R., Eyvindson, K., Kouki, J., Laaksonen, T. & Punttila, P. 2022: More wood but less biodiversity in forests in Finland: a historical evaluation. - Memoranda Societatis pro Fauna et Flora Fennica 98: 1-11.
https://journal.fi/msff/article/view/120306
Pakkala, T., Tiainen, J., Pakkala, H., Piha, M. & Kouki, J. 2022: Dynamics of the cavities of Grey-Headed Woodpeckers Picus canus reveal their long- and short-term ecological roles in boreal forests. - Acta Ornithologica 56: 199-208, 10.
https://doi.org/10.3161/00016454AO2021.56.2.006
Seibold, S., Rammer, W., Hothorn, T., Seidl, R., Ulyshen, M.D., Lorz, J., Cadotte, M.W., Lindenmayer, D.B., ...[incl. Kouki, J.]..., Müller, J., 2021. The contribution of insects to global forest deadwood decomposition. Nature 597, 77-81.
http://dx.doi.org/10.1038/s41586-021-03740-8
Hardenbol, A., Kuzmin, A., Korhonen, L., Korpelainen, P., Kumpula, T., Maltamo, M., Kouki, J., 2021. Detection of aspen in conifer-dominated boreal forests with seasonal multispectral drone image point clouds. Silva Fennica 55.
https://doi.org/10.14214/sf.10515
Tatsumi, S., Strengbom, J., Cugunovs, M. & Kouki, J. 2020: Partitioning the colonization and extinction components of beta diversity across disturbance gradients. Ecology, e03138.
https://doi.org/10.1002/ecy.3183
Hardenbol, A., den Herder, M. & Kouki, J. 2020: Long-term effects of prescribed burning, tree retention, and browsing on deciduous tree recruitment in European boreal forests. Canadian Journal of Forest Research.
https://doi.org/10.1139/cjfr-2020-0231
Kouki, J, Salo, K. 2020 Forest disturbances affect functional groups of macrofungi in young successional forests – harvests and fire lead to different fungal assemblages. Forest Ecology and Management 463, 118039
https://doi.org/10.1016/j.foreco.2020.118039
Hardenbol, A.A., Junninen, K., Kouki, J., 2020. A key tree species for forest biodiversity, European aspen (Populus tremula), is rapidly declining in boreal old-growth forest reserves. Forest Ecology and Management 462, 118009.
https://doi.org/10.1016/j.foreco.2020.118009
Hämäläinen, K., Junninen, K., Halme, P., Kouki, J., 2020. Managing conservation values of protected sites: How to maintain deciduous trees in white-backed woodpecker territories. Forest Ecology and Management 461, 117946.
https://doi.org/10.1016/j.foreco.2020.117946
Cugunovs, M., Tuittila, E.-S., Kouki, J., 2020. Proximity to charred logs in burned forests likely affects decomposition processes in the soil.
https://doi.org/10.14214/sf.10084
Rodriguez, A., Pohjoismäki, J.L.O., Kouki, J., 2019. Diversity of forest management promotes parasitoid functional diversity in boreal forests. Biological Conservation 238, 108205.https://doi.org/10.1016/j.biocon.2019.108205
Salo, K., Domisch, T., Kouki, J., 2019. Forest wildfire and 12 years of post-disturbance succession of saprotrophic macrofungi (Basidiomycota, Ascomycota). Forest Ecology and Management 451, 117454.
https://doi.org/10.1016/j.foreco.2019.117454
Suominen, M., Junninen, K., Kouki, J., 2019. Diversity of fungi in harvested forests 10 years after logging and burning: Polypore assemblages on different woody substrates. Forest Ecology and Management 446, 63-70.
https://doi.org/10.1016/j.foreco.2019.05.030
Hardenbol, A.A., Pakkala, T., Kouki, J., 2019. Persistence of a keystone microhabitat in boreal forests: Cavities of Eurasian Three-toed Woodpeckers (Picoides tridactylus). Forest Ecology and Management 450, 117530.
https://doi.org/10.1016/j.foreco.2019.117530
Pakkala, T., Tiainen, J., Pakkala, H., Piha, M., Kouki, J., 2019. Nest tree characteristics of the Lesser Spotted Woodpecker (Dendrocopos minor) in boreal forest landscapes. Ornis Fennica 96, 00-00.
Pakkala, T., Tiainen, J., Piha, M., Kouki, J., 2019. Hole life: survival patterns and reuse of cavities made by the Lesser Spotted Woodpecker Dendrocopos minor. Ardea 107, 173-181.
https://doi.org/10.5253/arde.v107i2.a4
Kunttu, P., Junninen, K., Kulju, M., Kouki, J., 2018. Major wood-decay fungal groups have distinct occurrence patterns on woody substrates. Baltic Forestry 24, 164-180.
Eales, J., Haddaway, N.R., Bernes, C., Cooke, S.J., Jonsson, B.G., Kouki, J., & Petrokofsky, G., Taylor, J 2018: What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review. - Environmental Evidence 7, 19.
https://doi.org/10.1186/s13750-018-0131-5
Suominen, M., Junninen, K., Heikkala, O., Kouki, J. 2018: Burning harvested sites enhances polypore diversity on stumps and slash. - Forest Ecology and Management 414: 47-53.
http://dx.doi.org/10.1111/1365-2664.13098
Pakkala, T., Piiroinen, J., Lakka, J., Tiainen, J., Piha, M, Kouki, J. 2018: Tree sap as an important seasonal food resource for woodpeckers: the case of the Eurasian three-toed woodpecker (Picoides tridactylus) in southern Finland. - Annales Zoologici Fennici 55: 77-92.
https://doi.org/10.5735/086.055.0108
Granath, G., Kouki, J., Johnson, S., Heikkala, O., Rodríguez, A., Strengbom, J. 2018: Trade-offs in berry production and biodiversity under prescribed burning and retention regimes in Boreal forests. - Journal of Applied Ecology 55:1658–1667.
http://dx.doi.org/10.1111/1365-2664.13098
Pakkala, T., Tiainen, J., Piha, M., Kouki, J. 2018: Three-toed Woodpecker cavities in trees: a keystone structural feature in forests shows decadal persistence but only short-term benefit for secondary cavity-breeders. - Forest Ecology and Management 413: 70-75.
https://doi.org/10.1016/j.foreco.2018.01.043
Pakkala, T., Tiainen, J., Piha, M., Kouki, J. 2018: Nest tree characteristics of the old-growth specialist Three-toed Woodpecker Picoides tridactylus. - Ornis Fennica 95: 89-102.
https://www.ornisfennica.org/pdf/latest/18Pakkala.pdf
Pakkala, T., Tiainen, J., Piha, M., Kouki, J. 2018: How important are nest cavities made by the Three-toed Woodpecker Picoides tridactylus for cavity-nesting forest bird species? - Acta Ornithologica 53: 63-79.
https://doi.org/10.3161/00016454AO2018.53.1.007
Salo, K., Kouki, J., 2018. Severity of forest wildfire had a major influence on early successional ectomycorrhizal macrofungi assemblages, including edible mushrooms. - Forest Ecology and Management 415-416: 70-84.
https://doi.org/10.1016/j.foreco.2017.12.044
Pasanen, H., Junninen, K., Boberg, J., Tatsumi, S., Stenlid, J., Kouki, J. 2018. Life after tree death: Does restored dead wood host different fungal communities to natural woody substrates? Forest Ecology and Management 409, 863-871.
https://doi.org/10.1016/j.foreco.2017.12.021
Jokela, J., Juutilainen, K., Korpela, L., Kouki, J., Kuntsi, S., Koivula, M., Siitonen, J., 2018. Cross-taxon congruence and relationships to stand characteristics of vascular plants, bryophytes, polyporous fungi and beetles in mature managed boreal forests. Ecological Indicators 85, 137-145.
Thorn, S., Seibold, S., Heikkala, O., Koivula, M., Venugopal, P., Kouki, J., 2018. New records of Northern bats (Eptesicus nilssonii) in boreal clear cuts emphasize the value of green-tree retention for conservation. - Nyctalus 19: 22-26.
Pakkala, T., Kouki, J., Piha, M., Tiainen, J. 2017: Phloem sap in damaged Scots pine trees provides instant foraging opportunities for Three-toed Woodpeckers Picoides tridactylus. - Ornis Svecica 27: 144-149.
Cugunovs, M., Tuittila, E.-S., Sara-aho, I., Pekkola, L., Kouki, J., 2017. Recovery of boreal forest soil and tree stand characteristics a century after intensive slash-and-burn cultivation. - Silva Fennica, article id 7723
https://doi.org/10.14214/sf.7723
Rodriguez, A., & Kouki, J. 2017: Disturbance-mediated heterogeneity drives pollinator diversity in boreal managed forest ecosystems. - Ecological Applications 27: 589-602.
http://dx.doi.org/10.1002/eap.1468
Venugopal, P., Junninen, K., Edman, M., & Kouki, J. 2017: Assemblage composition of fungal wood-decay species has a major influence on how climate and wood quality modify decomposition. - FEMS Microbiology Ecology, 93, in press.
https://doi.org/10.1093/femsec/fix002
Cugunovs, M., Tuittila, E.-S., Mehtätalo, L., Pekkola, L., Sara-Aho, I., & Kouki, J. 2017: Variability and patterns in forest soil and vegetation characteristics after prescribed burning in clear-cuts and restoration burnings. - SIlva Fennica, article id 1718.
https://doi.org/10.14214/sf.1718
Pakkala, T., Tiainen, J. & Kouki, J. 2017: The importance of nesting cavity and tree reuse of the three-toed woodpecker Picoides tridactylus in dynamic forest landscapes. - Annales Zoologici Fennici 54: inpress.
Heikkala, O., Martikainen, P., Kouki, J. 2017: Prescribed burning is an effective and quick method to conserve rare pyrophilous forest-dwelling flat bugs. - Insect Conservation and Diversity 10: 32-41.
http://dx.doi.org/10.1111/icad.12195
Eales, J., Haddaway, N.R., Bernes, C., Cooke, S.J., Jonsson, B.G., Kouki, J., & Petrokofsky, G. 2016: What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond tree regeneration, pyrophilous and saproxylic species? A systematic review protocol.
Environmental Evidence, 5, 24.
http://dx.doi.org/10.1186/s13750-016-0076-5
Pasanen, H., Rouvinen, S., Kouki. J. 2016: Artificial canopy gaps in the restoration of boreal conservation areas: long-term effects on tree seedling establishment in pine-dominated forests. - European Journal of Forest Research 135: 697-706.
http://dx.doi.org/10.1007/s10342-016-0965-8
Kunttu P., Kotiranta H., Kulju M., Pasanen H. & Kouki J. 2016: Occurrence patterns, diversity and ecology of aphyllophoroid fungi on the black alder (Alnus glutinosa) in an archipelago in the Baltic Sea. - Annales Botanici Fennici 53: 173–189.
Ylisirniö, A.-L., Mönkkönen, M., Hallikainen, V., Ranta-Maunus, T., Kouki, J. 2016: Woodland key habitats in preserving polypore diversity in boreal forests: effects of patch size, stand structure and microclimate. - Forest Ecology and Management 373: 138-148.
http://dx.doi.org/10.1016/j.foreco.2016.04.042
Hämäläinen, A., Hujo, M., Heikkala, O., Junninen, K. & Kouki, J. 2016: Retention tree characteristics have major influence on the post-harvest tree mortality and availability of coarse woody debris in clear-cut areas. - Forest Ecology and Management 369: 66-73.
http://www.sciencedirect.com/science/article/pii/S037811271630113X
Mazziotta, A., Triviño, M., Tikkanen, O.-P., Kouki, J., Strandman, H. & Mönkkönen, M. 2016: Habitat associations drive species vulnerability to climate change in boreal forests. - Climatic Change: 585-595.
http://dx.doi.org/10.1007/s10584-015-1591-z
Abbott, B. W., Jones, J. B., Schuur, E. A. G., Chapin, F. S., III, Bowden, W. B., Bret-Harte, M. S., Epstein, H. E., Flannigan, M. D., Harms, T. K., Hollingsworth, T. N., Mack, M. C., McGuire, A. D., Natali, S. M., Rocha, A. V., Tank, S. E., Turetsky, M. R., Vonk, J. E., Wickland, K. P., Aiken, G. R., Alexander, H. D., Amon, R. M. W., Benscoter, B. W., Bergeron, Y., Bishop, K., Blarquez, O., Bond-Lamberty, B., Breen, A. L., Buffam, I., Cai, Y., Carcaillet, C., Carey, S. K., Chen, J. M., Chen, H. Y. H., Christensen, T. R., Cooper, L. W., Cornelissen, J. H. C., Groot, W. J. d., DeLuca, T. H., Dorrepaal, E., Fetcher, N., Finlay, J. C., Forbes, B. C., French, N. H. F., Gauthier, S., Girardin, M. P., Goetz, S. J., Goldammer, J. G., Gough, L., Grogan, P., Guo, L., Higuera, P. E., Hinzman, L., Hu, F. S., Hugelius, G., Jafarov, E. E., Jandt, R., Johnstone, J. F., Karlsson, J., Kasischke, E. S., Kattner, G., Kelly, R., Keuper, F., Kling, G. W., Kortelainen, P., Kouki, J., Kuhry, P., Laudon, H., Laurion, I., Macdonald, R. W., Mann, P. J., Martikainen, P. J., McClelland, J. W., Molau, U., Oberbauer, S. F., Olefeldt, D., Paré, D., Parisien, M.-A., Payette, S., Peng, C., Pokrovsky, O. S., Rastetter, E. B., Raymond, P. A., Raynolds, M. K., Rein, G., Reynolds, J. F., Robards, M., Rogers, B. M., Schädel, C., Schaefer, K., Schmidt, I. K., Shvidenko, A., Sky, J., Spencer, R. G. M., Starr, G., Striegl, R. G., Teisserenc, R., Tranvik, L. J., Virtanen, T., Welker, J. M. & Zimov, S. 2016:
Biomass offsets little or none of permafrost carbon release from soils, streams, and wildfire: an expert assessment. - Environmental Research Letters 11: 034014.
http://dx.doi.org/10.1088/1748-9326/11/3/034014
Selected to Highlights 2016 collection from Environmental Research Letters.
Highly Cited in the Web of Science.
Heikkala, O., Martikainen, P., Kouki, J. 2016: Decadal effects of emulating natural disturbances in forest management on saproxylic beetle assemblages. - Biological Conservation 194: 39-47.
http://dx.doi.org/10.1016/j.biocon.2015.12.002
Venugopal, P., Julkunen-Tiitto, R., Junninen, K., Kouki, J. 2016: Phenolic compounds in Scots pine heartwood: are kelo trees a unique woody substrate? - Canadian Journal of Forest Research 46: 225-233.
http://dx.doi.org/10.1139/cjfr-2014-0498
Heikkala, O., Seibold, S., Koivula, M., Martikainen, P., Müller, J., Thorn, S., Kouki, J. 2016: Retention forestry and prescribed burning result in functionally different saproxylic beetle assemblages than clear-cutting. - Forest Ecology and Management 359: 51-58.
http://dx.doi.org/10.1016/j.foreco.2015.09.043
Venugopal, P., Junninen, K., Linnakoski, R., Edman, M., Kouki J. 2016: Climate and wood quality have decayer-specific effects on fungal wood decomposition. - Forest Ecology and Management 360: 341-351.
http://dx.doi.org/10.1016/j.foreco.2015.10.023
Rodríguez, A., Kouki, J., 2015. Emulating natural disturbance in forest management enhances pollination services for dominant Vaccinium shrubs in boreal pine-dominated forests. - Forest Ecology and Management 350: 1-12.
http://dx.doi.org/10.1016/j.foreco.2015.04.029 (OPEN ACCESS)
Awarded the Editors' Choice status of Forest Ecology and Management by the Elsevier Editors' Panel.
Kunttu, P., Junninen, K., Kouki, J. 2015: Dead wood as an indicator of forest naturalness: a comparison of methods. - Forest Ecology and Management 353: 30-40.
http://dx.doi.org/10.1016/j.foreco.2015.05.017
Suominen, M., Junninen, K., Heikkala, O., Kouki, J., 2015. Combined effects of retention forestry and prescribed burning on polypore fungi. - Journal of Applied Ecology 52: 1001-1008.
http://dx.doi.org/10.1111/1365-2664.12447
Hämäläinen, A., Kouki, J., Lohmus, P., 2015. Potential biodiversity impacts of forest biofuel harvest: lichen assemblages on stumps and slash of Scots pine. Canadian Journal of Forest Research 45: 1239-1247.
http://dx.doi.org/10.1139/cjfr-2014-0532
Harper, K.A., Macdonald, S.E., Mayerhofer, M.S., Biswas, S.R., Esseen, P.-A., Hylander, K., Stewart, K.J., Mallik, A.U., Drapeau, P., Jonsson, B.-G., Lesieur, D., Kouki, J., Bergeron, Y., 2015. Edge influence on vegetation at natural and anthropogenic edges of boreal forests in Canada and Fennoscandia. - Journal of Ecology 103, 550-562.
http://dx.doi.org/10.1111/1365-2745.12398 (OPEN ACCESS)
Pasanen, H., Rehu, V., Junninen, K., Kouki, J., 2015. Prescribed burning of canopy gaps facilitates tree seedling establishment in restoration of pine-dominated boreal forests. - Canadian Journal of Forest Research 45: 1225-1231.
http://dx.doi.org/10.1139/cjfr-2014-0460
Maltamo, M., Pesonen, A., Korhonen, L., Kouki, J., Vehmas, M., Eerikäinen, K., 2015. Inventory of aspen trees in spruce dominated stands in conservation area. - Forest Ecosystems 2: 12.
http://dx.doi.org/10.1186/s40663-015-0037-4
Takala,. T., Haverinen, J., Kuusela, E., Tahvanainen, T., Kouki, J. 2015: Does cattle movement between forest pastures and fertilized grasslands affect the bryophyte and vascular plant communities in vulnerable forest pasture biotopes? - Agriculture, Ecosystems & Environment 201: 26-42.
http://dx.doi.org/10.1016/j.agee.2014.12.005
Vuorio, V., Tikkanen, O-P., Mehtätalo, L., Kouki, J. 2015: The effects of forest management on terrestrial habitats of a rare and a common newt species. - European Journal of Forest Research 134: 377-388.
http://dx.doi.org/10.1007/s10342-014-0858-7
Takala, T., Kouki, J. & Tahvanainen, T. 2014: Bryophytes and their microhabitats in coniferous forest pastures: should they be considered in the pasture management? - Biodiversity and Conservation 12: 3127-3142.
http://dx.doi.org/10.1007/s10531-014-0769-4
Mazziotta, A., Triviño, M., Tikkanen, O.-P., Kouki, J., Strandman, H., Mönkkönen, M., 2014. Applying a framework for landscape planning under climate change for the conservation of biodiversity in the Finnish boreal forest. - Global Change Biology 21: 637-651.
http://dx.doi.org/10.1111/gcb.12677
Koivula, M., Kuuluvainen, T., Hallman, E., Kouki, J., Siitonen, J. & Valkonen, S., 2014: Forest management inspired by natural disturbance dynamics (DISTDYN) – a long-term research and development project in Finland. - Scandinavian Journal of Forest Research 29: 579-592.
http://dx.doi.org/10.1080/02827581.2014.938110
Johnson, S., Strengbom, J. & Kouki, J. 2014: Low levels of tree retention do not mitigate the effects of clearcutting on ground vegetation dynamics. - Forest Ecology and Management 330: 67-74.
http://dx.doi.org/10.1016/j.foreco.2014.06.031
Heikkala, O., Suominen, M., Junninen, K., Hämäläinen, A. & Kouki, J. 2014: Effects of retention level and fire on retention tree dynamics in boreal forests. - Forest Ecology and Management 328: 193-201.
http://dx.doi.org/10.1016/j.foreco.2014.05.022
Fedrowitz, K., Koricheva, J., Baker, S., Lindenmayer, D., Palik, B., Rosenvald, R., Beese, W., Franklin, J., Kouki, J., Macdonald, E., Messier, C., Sverdrup-Thygeson, A. & Gustafsson, L. 2014: Can retention forestry help conserve biodiversity? A meta-analysis. - Journal of Applied Ecology 51: 1660-1679.
http://dx.doi.org/10.1111/1365-2664.12289
Highly Cited in the Web of Science.
Pasanen, H., Junninen, K. & Kouki, J. 2014: Restoring dead wood in forests diversifies wood-decaying fungal assemblages but does not quickly benefit red-listed species. - Forest Ecology and Management 312: 92-100.
http://dx.doi.org/10.1016/j.foreco.2013.10.018
Hämäläinen, A., Kouki, J. & Lohmus, P. 2014: The value of retained Scots pines and their dead wood legacies for lichen diversity in clear-cut forests: the effects of retention level and prescribed burning. - Forest Ecology and Management 324: 89-100.
http://dx.doi.org/10.1016/j.foreco.2014.04.016
Pakkala, T., Lindén, A., Tiainen, J., Tomppo, E. & Kouki, J. 2014: Indicators of forest biodiversity: which bird species predict high breeding bird assemblage diversity in boreal forests at multiple spatial scales? - Annales Zoologici Fennici 51: 457-476.
http://www.annzool.net/PDF/anz51-free/anz51-457.pdf
Takala, T., Tahvanainen, T. & Kouki, J. 2014: Grazing promotes bryophyte species richness in seminatural grasslands. - Annales Botanici Fennici 51: 148-160.
Sverdrup-Thygeson, A., Gustafsson, L. & Kouki, J. 2014: Spatial and temporal scales relevant for conservation of dead-wood associated species: current status and perspectives. - Biodiversity and Conservation 23: 513-535.
http://dx.doi.org/10.1007/s10531-014-0628-3
Juutinen, A., Ollikainen, M., Mönkkönen, M., Reunanen, P., Tikkanen, O.-P. & Kouki, J. 2014: Optimal contract length for biodiversity conservation under conservation budget constraint. - Forest Policy and Economics 47: 14-24.
http://dx.doi.org/10.1016/j.forpol.2013.11.008
Halme, P., Allen, K. A., Aunins, A., Bradshaw, R. H. W., Brumelis, G., Cada, V., Clear, J. L., Eriksson, A.-M., Hannon, G., Hyvärinen, E., Ikauniece, S., Irsenaite, R., Jonsson, B. G., Junninen, K., Kareksela, S., Komonen, A., Kotiaho, J. S., Kouki, J., Kuuluvainen, T., Mazziotta, A., Mönkkönen, M., Nyholm, K., Olden, A., Shorohova, E., Strange, N., Toivanen, T., Vanha-Majamaa, I., Wallenius, T., Ylisirniö, A.-L. & Zin, E. 2013: Challenges of ecological restoration: Lessons from forests in northern Europe. - Biological Conservation 167: 248-256.
http://dx.doi.org/10.1016/j.biocon.2013.08.029
Kouki, J., Hyvärinen, E., Lappalainen, H., Martikainen, P. & Similä, M. 2012: Landscape context affects the success of habitat restoration: large-scale colonization patterns of saproxylic and fire-asssociated species in boreal forests. - Diversity and Distributions 18:348-355.
http://dx.doi.org/10.1111/j.1472-4642.2011.00839.x
Tikkanen, O-P., Matero, J., Mönkkönen, M., Juutinen, A. & Kouki, J. 2012: To thin or not to thin - bio-economic analysis of two alternative practices to increase amount of coarse woody debris in managed forests. - European Journal of Forest Research 131:1411-1422.
doi:10.1007/s10342-012-0607-8
Lankia, H., Wallenius, T., Varkonyi, G., Kouki, J. & Snäll, T. 2012: Forest fire history, aspen and goat willow in a Fennoscandian old-growth landscape: are current population structures a legacy of historical fires? - Journal of Vegetation Science 23:1159-1169.
doi: 10.1111/j.1654-1103.2012.01426.x
Lindenmayer, D.B., Franklin, J.F., Lõhmus, A., Baker, S., Bauhus, J., Beese, W., Brodie, A., Kiehl, B., Kouki, J., Martínez Pastur, G., Messier, C., Neyland, M., Palik, B., Sverdrup-Thygeson, A., Volney, J., Wayne, A. & Gustafsson, L. 2012: A major shift to the retention approach for forestry can help resolve some global forest sustainability issues. - Conservation Letters 5:421-431.
doi:10.1111/j.1755-263X.2012.00257.x
Highly Cited in the Web of Science.
Gustafsson, L., Baker, S., Bauhus, J., Beese, W., Brodie, A., Kiehl, B., Kouki, J., Lindenmayer, D.B., Lõhmus, A., Martínez Pastur, G., Messier, C., Neyland, M., Palik, B., Sverdrup-Thygeson, A., Volney, J., Wayne, A. & Franklin, J.F. 2012: Retention Forestry to Maintain Multifunctional Forests: a World Perspective. - BioScience 62: 633-645.
Highly Cited in the Web of Science.
Takala, T., Tahvanainen, T. & Kouki, J. 2012: Can re-establishment of cattle grazing restore bryophyte diversity in abandoned mesic semi-natural grasslands? Biodiversity and Conservation 21:981-992.
doi:10.1007/s10531-012-0234-1
Juutinen, A., Reunanen, P., Mönkkönen, M., Tikkanen, O.-P. & Kouki, J. 2012: Conservation of forest biodiversity using temporal conservation contracts. - Ecological Economics 81:121-129.
doi: 10.1016/j.ecolecon.2012.06.015
Komonen, A. & Kouki, J. 2011: Do woodland key habitats really support the functionality of reserve networks? - Biological Conservation 144:667.
doi:10.1016/j.biocon.2010.05.024
Mönkkönen, M., Reunanen, P., Kotiaho, J.S., Juutinen, A., Tikkanen, O.-P. & Kouki, J. 2011: Cost-effective strategies to conserve boreal forest biodiversity and long-term landscape-level maintenance of habitats. - European Journal of Forest Research 130:717-727.
doi:10.1007/s10342-010-0461-5
Ranius, T., Martikainen, P. & Kouki, J. 2011: Colonisation of ephemeral forest habitats by specialised species: beetles and bugs associated with recently dead aspen wood. - Biodiversity and Conservation 20: 2903-2915.
doi:10.1007/s10531-011-0124-y
Rouvinen, S. & Kouki, J. 2011: Tree regeneration in artificial canopy gaps established for restoring natural structural variability in a Scots pine stand. - Silva Fennica 45:1079-1091.
Brumelis, G., Jonsson B.G., Kuuluvainen, T., Kouki, J. & Shorohova, E. 2011: Forest naturalness in northern Europe: perspectives on processes, structures and species diversity - Silva Fennica 45: 807-821.
Gustafsson, L., Kouki, J. & Sverdrup-Thygeson, A, 2010: Tree retention as a conservation measure in clear-cut forests of North Europe: a review of ecological consequences. - Scandinavian Journal of Forest Research 25: 295-308.
doi: 10.1080/02827581.2010.497495
Kozlov, M.V., Hunter, M.D., Koponen, S., Kouki, J., Niemelä, P. & Price, P.W. 2010:
Diverse population trajectories among coexisting species of subarctic forest moths.
- Population Ecology 52: 295-305.
doi:10.1007/s10144-009-0183-z
Hyvärinen, E., Kouki, J. & Martikainen, P. 2009:
Prescribed fires and retention trees help to conserve beetle diversity in managed boreal forests despite their transient negative effects on some beetle groups.
- Insect Conservation and Diversity 2:93-105.
doi: 10.1111/j.1752-4598.2009.00048.x
Hokkanen, P., Kouki, J. & Komonen, A. 2009:
Nestedness, SLOSS and conservation networks of boreal herb-rich forests.
- Applied Vegetation Science 12: 295-303.
doi:10.1111/j.1654-109X.2009.01031.x
den Herder, M., Kouki, J. & Ruusila, V. 2009:
The effects of timber harvest, forest fire, and herbivores on regeneration of deciduous trees in boreal pine-dominated forests.
- Canadian Journal of Forest Research 39: 712-722.
doi:10.1139/X08-208
Lakka, J, & Kouki, J. 2009:
Patterns of field layer invertebrates in successional stages of managed boreal forest: implications for the declining Capercaillie Tetrao urogallus L. population.
- Forest Ecology and Management 257: 600-607.
doi:10.1016/j.foreco.2008.09.042
Halme, P., Kotiaho, J.S., Ylisirniö, A.-L., Hottola, J., Junninen, K., Kouki, J., Lindgren, M., Mönkkönen, M., Penttilä, R., Renvall, P., Siitonen, J., & Similä, M. 2009:
Perennial polypores as indicators of annual and red-listed polypores.
- Ecological Indicators 9: 256-266.
doi:10.1016/j.ecolind.2008.04.005
Vehmas, M., Kouki, J. & Eerikäinen K. 2009:
Long-term spatio-temporal dynamics and historical continuity of European aspen (Populus tremula L.) stands in the Koli National Park, eastern Finland.
- Forestry: An International Journal of Forest Research 82:135-148.
doi: 10.1093/forestry/cpn044
Komonen, A. & Kouki, J. 2008:
Do restoration fellings in protected forests increase the risk of bark beetle damages in adjacent forests? A case study from Fennoscandian boreal forest.
– Forest Ecology and Management 255: 3736-3743.
doi:10.1016/j.foreco.2008.03.029
Junninen, K., Kouki, J. & Renvall, P. 2008:
Restoration of natural legacies of fire in European boreal forests: an experimental approach to the effects on wood-decaying fungi.
- Canadian Journal of Forest Research 308: 208-215.
doi:10.1139/X07-145
Pitkänen, A., Kouki. J., Viiri, H. & Martikainen, P. 2008:
Effects of controlled forest burning and intensity of timber harvesting on the occurrence of pine weevils, Hylobius spp., in regeneration areas.
– Forest Ecology and Management 255: 522-529.
doi:10.1016/j.foreco.2007.09.024
Rouvinen, S. & Kouki, J. 2008:
The natural northern European boreal forests: unifying the concepts, terminologies, and their application.
- Silva Fennica 42: 135-146.
Tikkanen, O-P, Heinonen, T., Kouki, J. & Matero J. 2007:
Habitat suitability models of saproxylic red-listed boreal forest species in long-term matrix management: Cost-effective measures for multi-species conservation.
– Biological Conservation 14:359-372.
Martikainen, P., Kouki. J. & Heikkala, O. 2006:
The effects of green tree retention and subsequent prescribed burning on ground beetles (Coleoptera: Carabidae) in boreal pine-dominated forests.
- Ecography 29:659-670.
Tikkanen, O-P., Martikainen, P., Hyvärinen, E., Junninen, K. & Kouki, J. 2006:
Red-listed boreal forest species of Finland: associations with forest structure, tree species, and decaying wood.
- Annales Zoologici Fennici 43:373–383.
Pakkala, T., Kouki, J. & Tiainen, J. 2006:
Top predator and interference competition modify the occurrence and breeding success of a specialist species in a structurally complex forest environment.
- Annales Zoologici Fennici 43:137-164.
Hyvärinen, E., Kouki, J. & Martikainen, P. 2006:
Fire and green-tree retention in conservation of red-listed and rare dead-wood dependent beetles in boreal borests.
- Conservation Biology 20:1711-1719.
Junninen, K. & Kouki, J. 2006:
Are woodland key habitats hotspots for polypores (Basidiomycetes)?
- Scandinavian Journal of Forest Research 21:32-40.
Similä, M., Kouki, J., Mönkkönen, M., Sippola, A-M & Huhta, E. 2006: Co-variation and indicators of species diversity: can richness of forest-dwelling species be predicted in northern boreal forests? – Ecological Indicators 6:686-700.
Hyvärinen, E., Kouki, J. & Martikainen, P. 2006:
A comparison of three trapping methods in surveying forest-dwelling Coleoptera.
- European Journal of Entomology 103: 397-407. Download pdf.
Martikainen, P., Kouki, J., Heikkala, O., Hyvärinen, E. & Lappalainen, H. 2006:
Effects of green tree retention and fire on the crown damage caused by the pine shoot beetles (Tomicus spp.) in pine-dominated timber harvest areas.
– Journal of Applied Entomology 130:37-44.
Junninen, K., Similä, M., Kouki, J. and Kotiranta, H. 2006:
Assemblages of wood-inhabiting fungi along the gradients of succession and naturalness in boreal pine-dominated forests in Fennoscandia.
- Ecography 29:75-83.
Pitkänen, A., K. Törmänen, J. Kouki, E. Järvinen and H. Viiri 2005:
Effects of green tree retention, prescribed burning and soil treatment on pine weevil (Hylobius abietis and Hylobius pinastri) damage to planted Scots pine seedlings.
– Agricultural and Forest Entomology 7:319-331.
Rouvinen, S., Rautiainen, A. & Kouki, J. 2005:
A relation between historical forest use and current dead woody material in a boreal protected old-growth forest in Finland.
– Silva Fennica 39:21–36.
Komonen, A. & Kouki J. 2005:
Occurrence and abundance of fungus-dwelling beetles (Ciidae) in boreal forests and clearcuts: habitat associations at two spatial scales.
– Animal Biodiversity and Conservation 28:137-147.
Uotila, A., Hotanen J.-P. & Kouki , J. 2005:
Succession of understorey vegetation in managed and semi-natural Scots pine forests in eastern Finland and Russian Karelia.
– Canadian Journal of Forest Research 35:1422-1441.
Hyvärinen, E, Kouki, J., Martikainen, P. & Lappalainen, H. 2005:
Short-term effects of controlled burning and green-tree retention on beetle (Coleoptera) assemblages in managed boreal forests.
– Forest Ecology and Management 212:315-332.
Uotila, A. & Kouki, J. 2005:
Understorey vegetation in spruce-dominated forests in eastern Finland and Russian Karelia: successional patterns after anthropogenic and natural disturbances.
– Forest Ecology and Management 215:113-137.
Kouki, J., K. Arnold & P. Martikainen 2004:
Long-term persistence of aspen and its associated threatened species are endangered in old-growth conservation areas in Finland.
– Journal for Nature Conservation 12:41–52
Similä. M, J. Kouki & P. Martikainen 2003:
Saproxylic beetles in managed and seminatural Scots pine forests: quality of dead wood matters.
– Forest Ecology and Management 174:365–381.
Löfman, S. & J. Kouki 2003:
Scale and dynamics of a transforming forest landscape.
– Forest Ecology and Management 175: 247–252.
Martikainen, P. & J. Kouki 2003:
Sampling the rarest: threatened beetles in boreal forest biodiversity inventories.
– Biodiversity and Conservation 12:1815–1831.
Similä, M., J. Kouki, M. Mönkkönen & A-L. Sippola 2002:
Beetle species richness in four boreal forest site types in northern Finland.
– Ecography 25:42-52.
Uotila, A., J. Kouki, H. Kontkanen & P. Pulkkinen 2002:
Assessing the naturalness of boreal forests in eastern Fennoscandia.
– Forest Ecology and Management 161:257- 277.
Similä, M., J. Kouki, P. Martikainen & A. Uotila 2002:
Conservation of the beetles in the boreal forests: the effects of naturalness and forest age on species assemblages.
– Biological Conservation 106:19-27.
Rouvinen, S. & J. Kouki 2002:
Spatiotemporal availability of dead wood in protected old-growth forests: a case study from boreal forests in eastern Finland.
– Scandinavian Journal of Forest Research 17: 317–329.
Löfman, S. & J. Kouki 2001:
Fifty years of landscape transformation in managed forests of Southern Finland.
– Scandinavian Journal of Forest Research 16:44–53.
Kouki, J., S. Löfman, P. Martikainen, S. Rouvinen & A. Uotila 2001:
Forest fragmentation in Fennoscandia: linking habitat requirements of wood-associated threatened species to landscape and habitat changes.
– Scandinavian Journal of Forest Research Suppl. 3: 27-37.
Kouki, J. & A. Väänänen 2000:
Impoverishment of resident old-growth forest bird assemblages along isolation gradient of protected areas in eastern Finland.
– Ornis Fennica 77: 145–154.
Kouki, J. 1999:
Latitudinal gradients in species richness in northern areas: some exceptional patterns.
– Ecological Bulletins 47:30–37.
Kouki, J., Lyytikäinen-Saarenmaa, P., Henttonen, H. & Niemelä, P. 1998:
Cocoon predation on diprionid sawflies: the effect of forest fertility
– Oecologia 116:482-488.
Kouki, J., McCullough, D. G. and Marshall, L. D. 1997:
Effect of forest stand and edge characteristics on the vulnerability of jack pine stands to jack pine budworm (Choristoneura pinus pinus) damage.
- Canadian Journal of Forest Research 27: 1765-1772.
McCullough, D. G., Marshall, L. D., Buss, L. J. and J. Kouki:1996.
Relating jack pine budworm damage to stand inventory variables in northern Michigan.
- Canadian Journal of Forest Research 26:2180-2190.
Kouki, J. & I. Hanski 1995:
Population aggregation facilitates coexistence of many competing carrion fly species.
– Oikos 72:223–227.
Haila, Y. & J. Kouki 1994:
The phenomenon of biodiversity in conservation biology.
– Annales Zoologici Fennici 31:5–18.
Kouki, J., P. Niemelä & M. Viitasaari 1994:
Reversed latitudinal gradient in species richness of sawflies (Hymenoptera, Symphyta).
– Annales Zoologici Fennici 31:83–88.
Kouki, J. 1994:
Preface – Biodiversity in the Fennoscandian boreal forests: natural variation and its management.
- Annales Zoologici Fennici 31:3–4.
Kouki, J. 1993:
Herbivory modifies the production of different leaf types in the yellow water-lily, Nuphar lutea (Nymphaeaceae).
- Functional Ecology 7:21–26.
Kouki, J. 1993:
Female’s preference for oviposition site and larval performance in the water-lily beetle, Galerucella nymphaeae (Coleoptera: Chrysomelidae).
- Oecologia 93:42–47.
Kouki, J., G.J. Niemi & A. Rajasärkkä 1992:
Habitat associations of breeding peatland passerines in eastern Finland.
– Ornis Fennica 69:126–140.
Kouki, J. & T. Hokkanen 1992:
Long-term variation in the needle litterfall of a Scots pine Pinus sylvestris stand: relation to temperature factors.
– Oecologia (Berl.) 89:176– 181.
Kouki, J. 1991:
Tracking spatially variable environments: an experimental study on the oviposition of the water-lily beetle.
– Oikos 61:243–249.
Kouki, J. 1991:
Small-scale distributional dynamics of the yellow water-lily and its herbivore Galerucella nymphaeae (Coleoptera: Chrysomelidae).
– Oecologia (Berl.) 88:48–54.
Kouki, J. 1991:
The effect of the water-lily beetle, Galerucella nymphaeae , on the leaf production and leaf longevity of the water-lily, Nuphar lutea.
– Freshwater Biology 26:347–353.
Kouki, J. & U. Häyrinen 1991:
On the relationship between distribution and abundance of birds breeding in Finnish mires: the effect of habitat specialization.
– Ornis Fennica 68:170–177.
Järvinen, O., J. Kouki & U. Häyrinen 1987:
Reversed latitudinal gradients in total density and species richness of birds breeding on Finnish mires.
– Ornis Fennica 64:67– 73.
Häyrinen, U, O. Järvinen & J. Kouki 1986:
The bird sanctuary of Kesonsuo, a raised bog in North Karelia: its breeding bird assemblages, summer visitors and spring migrants.
– Ornis Fennica 63:97–111.
Kouki, J. & O. Järvinen 1980:
Kertalaskennan tuloksista suolinnuston laskennassa. (On single-visit censuses of peatland birds)
– Ornis Fennica 57:134–136.
A1. Editorials in international scientific journals with referee practice
Dean, T. J., Fernández, M. E., Kouki, J., Mäkinen, H. & Ribeiro, N. 2024: Editorial: Time of farewell and new beginnings. - Forest Ecology and Management 551: 121472.
https://doi.org/10.1016/j.foreco.2023.121472
Binkley, D., Cook, R., Fernández, M. E., Kouki, J., Mäkinen, H. & Ribeiro, N. 2023: Editorial: The first decade of Tamm Reviews. - Forest Ecology and Management 534: 120875.
https://doi.org/10.1016/j.foreco.2023.120875
Binkley, D., Cook, R., Fernández, M.-E., Kouki, J., Mäkinen, H. & Ribeiro, N. 2023: Editorial: Recent trends in the publishing profile of Forest Ecology and Management. - Forest Ecology and Management 546: 121354.
https://doi.org/10.1016/j.foreco.2023.121354
B. Articles in international edited works and conference proceedings with referee practice
Hjältén, J., Kouki, J., Tolvanen, A., Sjögren, J. & Versluijs, M. 2023: Ecological Restoration of the Boreal Forest in Fennoscandia. - In: Girona, M. M., Morin, H., Gauthier, S. & Bergeron, Y. (eds.), Boreal Forests in the Face of Climate Change: Sustainable Management. Springer International Publishing, pp. 467-489.
https://doi.org/10.1007/978-3-031-15988-6_18
Bauhus, J., , Kouki, J., Paillet, Y., Asbeck, T., Marchetti, M., 2017. How does the forest-based bioeconomy impact forest biodiversity? In: Winkel, G. (Ed.), Towards a sustainable European forest-based bioeconomy – assessment and the way forward. European Forest Institute, pp. 65-74.
Kellomäki, S., J. Kouki, P. Niemelä & H. Peltola 2001: Timber industry. – In Levin, S.A. (ed.), Encyclopedia of Biodiversity vol. 5, Harcourt Publishers, p. 655–666.
Kouki, J. & S. Löfman 1998. Forest fragmentation: process, concepts and implications for species. Pp. 187-203 in J. Dover (ed.), Key concepts in landscape ecology, IALE (UK).
Hanski, I, J. Kouki & A. Halkka 1993: Three explanations of the positive relationship between distribution and abundance of species. – In Ricklefs, R. E. & Schluter, D. (eds.), Species diversity in ecological communities – Historical and geographical perspectives, Chigago University Press, p. 108–116.
Niemi, G.J., J. Hanowski, J. Kouki & A. Rajasärkkä 1983: Intercontinental comparisons of habitat structure as related to bird distribution in peatlands of eastern Finland and northern Minnesota, USA. pp. 59–73 in C.W. Fucsman & S.A. Spiragelli, eds.: Proceedings of the international symposium on peat utilization. Bemidji State University, Bemidji, Minnesota, USA.
C. Articles in Finnish scientific journals with referee practice
Pitkänen, A., E. Järvinen, J. Turunen, T Kolström & J. Kouki 2005: Kulotuksen ja maan muokkauksen vaikutus männyn siementen itämiseen ja kylvötaimien varhaiseen eloonjääntiin. Metsätieteen Aikakauskirja 4/2005: 387-397.
Matero, J., O. Saastamoinen, and J. Kouki 2003: Metsien tuottamat ekosysteemipalvelut ja niiden arvottaminen. Metsätieteen Aikakauskirja 3/2003: 355–384.
Kouki, J. & E. Ranta 1987: Ornitologin menetelmät I. Tilastollisen testin valinta (Ornithological methods I. Choosing the correct statistical test). – Ornis Fennica 64:121–122.
Ranta, E. & J. Kouki 1987: Ornitologin menetelmät. Prosenttilukujen vertaaminen (Ornithological methods III. How to compare percentage estimates). – Ornis Fennica 65:44–45.
Kouki, J. & Y. Haila 1985: Lajimäärä, näytekoko ja rarefaktio – lajimäärän vertailun ongelma. (Rarefaction as a method for comparing species numbers) – Luonnon Tutkija 89:156–159.
D. Articles in Finnish edited works and conference proceedings with referee practice
Kondelin, H., R. Heikkilä & J. Kouki 2006: Ecosystem services provided by Finnish mires. The Finnish Environment 23:215-228.
Kouki, J. & P. Martikainen 2001: Conserving threatened species in boreal forest landscapes: balancing management actions between protected areas and managed forests at the ecosystem level. – In Vuori, K.M & J. Kouki (eds.) 2001: International conference, Ecosystem management in boreal forest landscapes. Publications of the North Karelia Regional Environment Centre 25:27.
Martikainen, P. & J. Kouki 2001: Threatened species in ecosystem management: what is the value of normal beetle inventories)? – In Vuori, K.M & J. Kouki (eds.) 2001: International conference, Ecosystem management in boreal forest landscapes. Publications of the North Karelia Regional Environment Centre 25:34.
E. Scientific monographs published abroad
F. Scientific monographs published in Finland
Kouki, J. 1991: Interaction between a specialist herbivore, Galerucella nymphaeae, and its host plant, Nuphar lutea. – PhD thesis, viii + 91 p., University of Helsinki, Helsinki.
G. Other scientific publications (including a few unclassified ones)
Kouki, J., Junninen, K., Mäkelä, K., Hokkanen, M., Aakala, T., Hallikainen, V., Korhonen, K.T., Kuuluvainen, T., Loiskekoski, M., Mattila, O., Matveinen, K., Punttila, P., Ruokanen, I., Valkonen, S., Virkkala, R. 2018: Metsät. In/Teoksessa.: Kontula, T. & Raunio, A. (eds./toim.). Suomen luontotyyppien uhanalaisuus 2018. Luontotyyppien punainen kirja – Osa 1: Tulokset ja arvioinnin perusteet. Suomen ympäristökeskus & ympäristöministeriö, Helsinki. Suomen ympäristö 5/2018. s. 171-201.
http://julkaisut.valtioneuvosto.fi/handle/10024/161233
Kouki, J., Junninen, K., Mäkelä, K., Hokkanen, M., Aakala, T., Hallikainen, V., Korhonen, K.T., Kuuluvainen, T., Loiskekoski, M., Mattila, O., Matveinen, K., Punttila, P., Ruokanen, I., Valkonen, S., Virkkala, R. 2018: Metsät. In/Teoksessa.: Kontula, T. & Raunio, A. (eds./toim.). Suomen luontotyyppien uhanalaisuus 2018. Luontotyyppien punainen kirja – Osa 2: luontotyyppien kuvaukset. Suomen ympäristökeskus & ympäristöministeriö, Helsinki. Suomen ympäristö 5/2018. s. 475-567.
http://julkaisut.valtioneuvosto.fi/handle/10024/161234
Kouki, J. 2013: Nuoret luonnonmetsät metsien hoidon ja suojelun mallina - Uusia mahdollisuuksia metsäluonnon suojeluun talousmetsissä. - Luonnon Tutkija 117: 4-19.
Kouki, J. 2008: Bioenergia, biodiversiteetti ja biofunktiot: metsien energiakäytön ympäristövaikutuksia. - Silva Carelica 54: 104-113.Download pdf
Kouki, J. 2008: Fire continuums and their restoration in Fennoscandia. In: Hovi, M., Kytö, H. & Rautio, S.-K. (eds.): Fire and Forest. The international forest fire symposium in Kajaani 14-14.11.2007. Nature Protection Publications of Metsähallitus. Series A 175, pp. 11-16.
Kouki, J. & Tikkanen, O.-P. (eds.) 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksass- Conservation of threatened saproxylic species assemblages in eastern Finland: long-term cost-efficient solutions and their ecological, economic and social implications- Suomen Ympäristö- Finnish Environment 24:1-104.
Kouki, J. 2007: Uhanalaisten metsälajien suojelu talousmetsissä ja suojelualueilla: ekologiset, ekonomiset ja sosiaaliset vaikutukset - Conservation of threatened species in managed and protected areas: ecological, economic, and social impacts. - In: Kouki, J. & Tikkanen, O.-P. 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksassa - Suomen Ympäristö- Finnish Environment 24:7-10.
Tikkanen, O.-P. & Kouki, J. 2007: Alueen uhanalaiset metsälajit ja niiden elinympäristöjen mallinnus Threatened species of the study area and development of their habitat models. In: Kouki, J. & Tikkanen, O.-P. 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksassa - Suomen Ympäristö- Finnish Environment 24:27-35.
Tikkanen, O.-P., Heinonen, T. , Matero, J. & Kouki, J. 2007: Metsien käyttöskenaarioidenvvaikutukset puuntuotantoon, virkistyskäyttöön ja lajien habitaatin määrään - Timber production, recreation value and amount of habitat of red-listed species in different forest use scenarios. In: Kouki, J. & Tikkanen, O.-P. 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksassa - Suomen Ympäristö - Finnish Environment 24:44-50.
Raitio, K., Tikkanen, O.-P., Heinonen, T. & Matero, J. & Kouki, J. 2007:Metsien käyttöskenaarioiden sosiaaliset vaikutukset - The social consequences of the forest management scenarios. In: Kouki, J. & Tikkanen, O.-P. 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksassa - Suomen Ympäristö - Finnish Environment 24:51-61.
Tikkanen, O.-P., Matero, J. & Kouki, J. 2007: Yhdistetyn lajistonsuojelun, metsätalouden ja virkistyskäytön tulevaisuus: analyysi tuloksista ja menetelmän rajoitteista - General analysis of results and critical assumptions in the study. In: Kouki, J. & Tikkanen, O.-P. 2007: Uhanalaisten lahopuulajien elinympäristöjen turvaaminen suojelualueilla ja talousmetsissä: Kustannustehokkuus ja ekologiset, ekonomiset sekä sosiaaliset vaikutukset Kitsin seudulla Lieksassa - Suomen Ympäristö - Finnish Environment 24:62-66.
Kouki, J., Kotiaho, J.S. & Punttila, P. 2006: Ekologisia näkökulmia monmuotoisuuden turvaamisessa valtakunnallisesti ja alueellisesti. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 99-109.
Kouki, J., Tikkanen, O.-P-, Heinonen, T. & Matero, J. 2006: Uhanalaisen lahopuulajiston kattava ja tehokas turvaaminen: suojelun mahdollisuudet ovat sekä talous- että suojelumetsissä. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 106-107.
Hyvärinen, E., Kouki, J. & Martikainen, P. 2006: Talousmetsien kulotuksien, säästöpuiden ja suojelualueiden ennallistamispolttojen vaikutukset lahopuista riippuvaisiin kovakuoriaisiin. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 173-175.
Kotiaho, J.S, Kouki, J. & Punttila, P. 2006: Ongelmakohtia kuolleen puun ylläpidossa nykyisissä metsäekosysteemeissä. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 212-216.
Kouki, J., Martikainen, P., Heikkala, O., Hyvärinen, E., Järvinen, E., Lappalainen, H., Pitkänen, A., Törmänen, K. & Viiri, H. 2006: Säästöpuiden, metsänhoidollisen kulotuksen ja ennallistamispolttojen vaikutus ytimennävertäjien ja tukkimiehentäiden aiheuttamiin metsätuhoihin. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 217-219.
Maltamo, M., Hyyppä, J., Eerikäinen, K., Packalen, P., Vehmas, M. & Kouki, J. 2006: Metsikön vertikaalisen rakenteen tutkiminen 3D-kaukokartoituksen avulla. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 247-249.
Martikainen, P., Kouki, J. & Heikkala, O. 2006: Säästöpuuryhmien ja kulotuksen vaikutus metsien maakiitäjäislajistoon. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 250-251.
Pitkänen, A. & Kouki, J. 2006: Säästöpuiden vaikutus taimien tukkimiehentäituhoihin kulotetuilla ja kulottamattomilla aloilla. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 293-294.
Rouvinen, S. & Kouki, J. 2006: Nuorten metsien puustorakenteen monipuolistaminen pienaukkojen avulla. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 323-326.
Tikkanen, O.-P-, Heinonen, T. & Matero, J. & Kouki, J.2006: Metsälajiston suojelun ja metsien monikäytön kustannustehokkuusanalyysi Monsu-ohjelmistolla. In Horne, P., Koskela, T., Kuusinen, M., Otsamo, A. & Syrjänen, K.: Metson jäljillä. Etelä-Suomen metsien monimuotoisuusohjelman tutkimusraportti. Maa- ja metsätalousministeriö, Ympäristöministeriö, Metsäntutkimuslaitos, Suomen Ympäristökeskus, pp. 349-352.
Ollikainen, M. & Kouki, J. 2006. Monimuotoisuuden suojelun talous ja ekologia: suojelun määrä, kustannustehokkuus ja ohjauskeinot. - In: Jalonen, R., Hanski, I., Kuuluvainen, T., Nikinmaa, E. and Tahvonen, O. (eds.), Uusi metsäkirja. Tutkijoiden metsäpalaverin loppujulkaisu. Gaudeamus, pp. 208-215.
Kouki, J. & Tikkanen, O.-P. 2006. Uhanalaisten metsälajien ryhmittely elinympäristövaatimusten mukaan -In: Jalonen, R., Hanski, I., Kuuluvainen, T., Nikinmaa, E. and Tahvonen, O. (eds.), Uusi metsäkirja. Tutkijoiden metsäpalaverin loppujulkaisu. Gaudeamus, p. 189.
Kouki, J., Finér, L., Holopainen, I.J., Keinonen, T., Komonen, A., Kukkonen, J., Lehtinen, A., Määttä, T., Rannikko, P., Siiskonen, H. & Ala-aho, N. 2004: Ympäristöalan opetuksen ja tutkimuksen kehittäminen Joensuun yliopistossa. Työryhmän mietintö - Joensuun yliopiston Hallintoviraston raportteja ja selvityksiä n:o 35:1-88. (A science-related monograph).
Kuusinen, M., Ahlroth, P., Alanen, A., Hakalisto, S., Kouki, J., Salminen, P., Tonteri, T., Väisänen, R. and Syrjänen, K. 2003. Etelä-Suomen metsien monimuotoisuusohjelman luonnonsuojelubiologiset kriteerit. - Suomen Ympäristö 634: 1–72.
Rassi, P., Ahti, E., Eerola, L., Kouki, J., Kurikka, T., Kuuluvainen, T., Kuusinen, M., Lindholm, T., Merisaari, H., Virolainen, E., Aapala, K. and Suikki. A. 2003. Ennallistaminen suojelualueilla. Ennallistamistyöryhmän mietintö. - Suomen Ympäristö 618: 1–220.
Vuori, K.M & J. Kouki (eds.) 2001: International conference, Ecosystem management in boreal forest landscapes. Publications of the North Karelia Regional Environment Centre 25.
Kouki, J. 2001: Conserving forest biodiversity: how to facilitate survival of species in managed and natural boreal forests? - In Segers, H., E. Branquart, A. Caudron & J. Tack (eds.): Scientific tools for biodiversity conservation: monitoring, modelling and experiments. Proceedings of the 5th meeting of the European Platform for Biodiversity Strategy, 2-4 Dec 2001, Brussels, pp. 186-187
Kouki, J., T. Laakso, V. Sakovets & V. Gavrilov (eds.) 2000: Forest certification in the Matrosy Taiga Model Forest area, Russian Karelia. – University of Joensuu, Faculty of Forestry, Research Notes 107:1–190.
Kouki, J. 2000: Early successional forest habitats and forest-dwelling species in Fennoscandia: underexploited potentials for species conservation? – In L. Karjalainen & T. Kuuluvainen (eds.): Disturbance dynamics in boreal forests. Abstracts. –p. 4. Helsinki, Finland.
Kouki, J., T. Laakso, V. Sakovets & V. Gavrilov 2000: Environmental acceptability of forestry. – In: Kolström, T. & T. Leinonen (eds.): Taiga Model Forest Project: final report. University of Joensuu, Faculty of Forestry, Research Notes 115:97–116.
Mitikka, V., M. Morero, M. Naumanen, J. Närä, A. Patrikainen, I. Romppanen, H. Sihvonen, R. Pankka, M. Malinen & J. Kouki 1999: Yliopisto ja ympäristö: Joensuun yliopiston metsätieteellisen tiedekunnan ympäristökatselmus. – University of Joensuu, Faculty of Forestry, Research Notes 85:1-75.
Toivonen, T., S. Koponen & J. Kouki (eds.) 1999: Luonto ja yhteiskunta. Juhlakirja Pekka Niemelälle hänen täyttäessään 50 vuotta. – Joensuun yliopiston metsätieteellisen tiedekunnan tiedonantoja Research Notes 89:1–153.
Kouki, J. 1999: Pekka Niemelä ja suomalainen biodiversiteettitutkimus: kuinka nähdä mitä muutkin näkevät, mutta ajatella mitä muut eivät ajattele. – In: Toivonen, T., S. Koponen & J. Kouki (eds.) 1999: Luonto ja yhteiskunta. Juhlakirja Pekka Niemelälle hänen täyttäessään 50 vuotta. – University of Joensuu, Faculty of Forestry, Research Notes 89:67–71.
Löfman S. & J. Kouki 1999. Fifty years of landscape change in private and state forests. International Association for Landscape Ecology, Abstracts of the 5th World Congress. Snowmass, Colorado.
Martikainen, P. & J. Kouki 1999: Laskevien esiintymistaajuuksien ongelma päiväperhosseurannassa: kuinka paljon perhoset ovat taantuneet? – Population trends of Finnish butterflies: what is the impact of the varying sampling effort? – Baptria 24:137-143.
Opas, L. L. & J. Kouki (eds.) 1999: From Joensuu to the World. Special volume on the occasion of the 30th anniversary of the University of Joensuu. – University of Joensuu, 143 pp.
Kouki, J. & L. L. Opas 1999: Introduction. – In: Opas, L. L. & J. Kouki (eds.) 1999: From Joensuu to the World. Special volume on the occasion of the 30th anniversary of the University of Joenssu. – University of Joensuu, pp. 8–13.
Kouki, J. (ed.) 1999: Maailman lintulajien suomenkieliset nimet – Finnish names of the birds of the World. – Suomen Lintutieteellinen Yhdistys – Finnish Ornithological Society, vii + 272 pp.
Kouki, J. & P. Niemelä 1997. The biological heritage of Finnish forests. – In Opas, L. (ed.), Finnish Forests – University of Joensuu, p. 13–33.
Kouki, J., S. Koponen, P. Niemelä and M. Kozlov 1995: Long-term dynamics of a lepidopteran community in a northern boreal forest. – Proceedings (abstracts) of the 18th Symposium of the Royal Entomological Society, 13–15 September 1995, London, p. 31.
Haila, Y., P. Niemelä & J. Kouki (eds.) 1994: Metsätalouden ekologiset vaikutukset boreaalisissa havumetsissä – Effects of silvicultural management on the ecological diversity of boreal forests. – Publications of the Finnish Forest Research Institute (Metsäntutkimuslaitoksen tiedonantoja), no. 482, 123 pp.
Kouki, J. 1994 (ed.): Biodiversity in the Fennoscandian boreal forests: natural variation and its management. – Special issue of Annales Zoologici Fennici 31:1–217.
Haila, Y., J. Kouki, P. Niemelä & J. Niemelä 1994: Metsätalouden ekologiset vaikutukset boreaalisessa havumetsässä: tutkimustuloksista käytännön suosituksiin (Effects of silvicultural management on the ecological diversity of boreal forests: how to proceed from research results to practical recommendations). – Publications of the Finnish Forest Research Institute (Metsäntutkimuslaitoksen tiedonantoja), 482:7– 17
Kouki, J. & Hokkanen, T. 1993: Säät vaikuttavat männyn neulasten varisuu (Weather conditions and pine needle litterfall.) – In: Metsäluonto ja ilmansaasteet (Forests and air pollution), Publications of the Finnish Forest Research Institute (Metsäntutkimuslaitoksen tiedonantoja) 446:96–97.
Kouki, J. 1993: Biodiversity in boreal forests: a review on ecological research needs and conservation possibilities (In Finnish with English summary). – Publications of the National Board of Forestry, Series A, no. 11. Vantaa, Finland. 88 pp.
Kouki, J., E. Ranta & H. Rita 1990: Biometristen aineistojen analyysi SAS-ohjelmistolla (Analyzing ecological data with SAS software). – Publications of the silvicultural department, University of Helsinki 66, 90 pp.
Ranta, E., H. Rita & J. Kouki 1989: Biometria – tilastotiedettä ekologeille (Biometry – Statistics for Ecologists). – Helsinki University Press, Helsinki, 569 pp. (Currently in its 7th print).
Ranta, E., H. Rita & J. Kouki 1988: Ekologian tilastollinen luonto (Statistical nature of ecology). – Tiede & Edistys 13:206–211.
Halkka, A., J. Kouki & O. Järvinen 1988: Evaluating Finnish botanical and zoological journals by citation analysis. – NOP-Nytt 14:6–16.